[1]. Jian Guan, Ming Fan*,Lihua Li*, MVNMF: Multiview Nonnegative Matrix
Factorization for Radio-multigenomic Analysis in Breast Cancer Prognosis,
Medical Image Analysis, In Press. (一区 Top,IF=10.6)
[2]. Wei Song, Xiang Pan, Ming Fan*, Lihua Li*, Clinical knowledge integrated
multi-task learning network for breast tumor segmentation and pathological
complete response prediction, Biomedical Signal Processing and Control,2025,
106: 107772.
[3]. Xiaobao Ding, Lin Zhang, Ming Fan* & Lihua Li*, Network-based transfer of
pan-cancer immunotherapy responses to guide breast cancer prognosis,npj
systems biology and applications, 2025, 11:4.
[4]. Yang Liu; Yiqi Zhu; Zhehao Gu; Jinshan Pan; Juncheng Li; Ming Fan; Lihua
Li; Tieyong Zeng; Enhanced dual contrast representation learning with cell
separation and merging for breast cancer diagnosis, Computer Vision and Image
Understanding, 2024, 247:104065
[5]. Haixia Long, Hao Wu, Chaoliang Sun, Xinli Xu, Xu-Hua Yang, Jie Xiao,
Mingqi Lv, Qiuju Chen, Ming Fan*, Biological mechanism of sex differences
in mental rotation: Evidence from multimodal MRI, transcriptomic and
receptor/transporter data. NeuroImage, 2024, 304: 120955. (一区 Top)
[6]. Xiaobao Ding, Lin Zhang, Ming Fan*, Lihua Li,TME-NET: an interpretable
deep neural network for predicting pan-cancer immune checkpoint inhibitor
responses,Briefings in Bioinformatics, 2024, 25(5), bbae410.
[7]. Haixia Long, Zihao Chen, Xinli Xu, Qianwei Zhou, Zhaolin Fang, Mingqi Lv,
Xu-Hua Yang, Jie Xiao, Hui Sun*, Ming Fan*. Elucidating genetic and
molecular basis of altered higher-order brain structure-function coupling in
major depressive disorder, NeuroImage, 2024, 297: 120722.
[8]. Ming Fan, Kailang Wang, Da Pan, Xuan Cao, Zhihao Li, Songlin He, Sangma
Xie*, Chao You, Yajia Gu & Lihua Li*, Radiomic analysis reveals diverse
prognostic and molecular insights into the response of breast cancer to
neoadjuvant chemotherapy: a multicohort study, Journal of Translational
Medicine, 2024, 22: 637.
[9]. Ming Fan, Xuan Cao, Fuqing Lü, Sangma Xie, Zhou Yu, Yuanlin Chen, Zhong
Lü, ∗ and Lihua Li*,Generative adversarial network-based synthesis of
contrastenhanced MR images from precontrast images for predicting histological characteristics in breast cancer,Physics in Medicine and Biology,
2024, 69: 095002.
[10]. Liangliang Zhang, Ming Fan*, Lihua Li*, Deconvolution-based
pharmacokinetic analysis to improve the prediction of pathological information
of breast cancer, Journal of Imaging Informatics in Medicine. 2024,37, 13–24,.
[11]. Liangliang Zhang, Ming Fan*, Lihua Li*, Efficient estimation of
pharmacokinetic parameters from breast dynamic contrast-enhanced MRI based
on a convolutional neural network for predicting molecular subtypes, Physics
in Medicine and Biology, 2023,68,245001.
[12]. Jian Guan, Ming Fan,∗ Lihua Li*, A weakly supervised NMF method to
decipher molecular subtype-related dynamic patterns in breast DCE-MR images,
Physics in medicine and biology, 2023, 68, 215002.
[13]. Ming Fan, Guangyao Huang, Junhong Lou, Xin Gao, Tieyong Zeng, Lihua Li,
Cross-parametric generative adversarial network-based magnetic resonance
image feature synthesis for breast lesion classification, IEEE Journal of
Biomedical and Health Informatics, 2023,27 (11), 5495-5505.
[14]. Jian Guan, Ming Fan*, Tieyong Zeng and Lihua Li*, Learning Common and
Task-specific Radiomic Features via Graph Regularized NMF for The Joint
Prediction of Multiple Clinical Indicators in Breast Cancer. IEEE Journal of
Biomedical and Health Informatics, 2023, 27, (10), 4792-4803.
[15]. Ming Fan, Xilin Wu, Jiadong Yu, Yueyue Liu, Kailang Wang, Tailong Xue,
Tieyong Zeng, Shujun Chen* and Lihua Li*, Multiparametric MRI radiomics
fusion for predicting the response and shrinkage pattern to neoadjuvant
chemotherapy in breast cancer, Frontiers in Oncology, 2023, 13:1057841.
[16]. Ming Fan, Chengcheng Yuan, Guangyao Huang, Maosheng Xu, Shiwei Wang,
Xin Gao, Lihua Li*, A framework for deep multitask learning with
multiparametric magnetic resonance imaging for the joint prediction of
histological characteristics in breast cancer, IEEE Journal of Biomedical and
Health Informatics, 2022,26(8), 3884-3895 (IF=7.02)
[17]. Haixia long#, Ming Fan#, Qiaojun Li, Xuhua Yang, Yujiao Huang, Xinli Xu, Ji
Ma, Jie Xiao, Tianzi Jiang, Structural and functional biomarkers of the insula
subregions predict sex differences in aggression subscales, Human brain
mapping, 2022, 1-13 (IF=5.038). 共同一作[18]. Liangliang Zhang, Ming Fan*, Shiwei Wang, Maosheng Xu, Lihua Li*,
Radiomic analysis of pharmacokinetic heterogeneity within tumor based on the
unsupervised decomposition of dynamic contrast enhanced MRI for predicting
histological characteristics of breast cancer, Journal of Magnetic Resonance
Imaging, 2022, 55(6), 1636-1647.
[19]. Ming Fan, Yajing Cui, You Chao, Li Liu, Yajia Gu, Weijun Peng, Qianming
Bai, Xin Gao, Lihua Li, Radiogenomic signatures of Oncotype DX recurrence
score predict survival in estrogen receptor-positive breast cancer: a multicohort
study, Radiology, 2022, 302 (3), 516-524 (IF=29.1).
[20]. Yane Li, Wei Yuan, Ming Fan, Bin Zheng, Lihua Li, Prediction of Short-Term
Breast Cancer Risk with Fusion of CC- and MLO-Based Risk Models in Four
View Mammograms, Journal of digital imaging, 2022, DOI10.1007/s10278-
019-00266-4 (IF=4.056).
[21]. Ming Fan, Wei Yuan, Weifen Liu, Xin Gao, Maosheng Xu, Shiwei Wang,
Lihua Li, A deep matrix factorization framework for identifying underlying
tissue-specific patterns of DCE-MRI: applications for molecular subtype
classification in breast cancer. Physics in Medicine and Biology, 2021, 66(24):
245013.
[22]. Ming Fan, You Zhang, Zhenyu Fu, Maosheng Xu, Shiwei Wang, Sangma Xie,
Xin Gao, Yue Wang and Lihua Li*, A Deep Matrix Completion Method for
Imputing Missing Histological Data in Breast Cancer by Integrating DCE-MRI
Radiomics, Medical Physics, 2021, 48(12): 7685-7697.
[23]. Haixia Long#, Ming Fan#, Xuhua Yang, Qiu Guan, Yujiao Huang, Xinli Xu,
Jie Xiao and Tianzi Jiang* Sex-related Difference in Mental Rotation
Performance is Mediated by the special Functional Connectivity Between the
Default Mode and Salience Networks, Neuroscience, 2021, 478: 65–74. (共同
第一)
[24]. Yu Li, Zeling Xu, Wenkai Han, Huiluo Cao, Ramzan Umarov, Aixin Yan, Ming
Fan, Huan Chen, Carlos M. Duarte, Lihua Li, Pak-Leung Ho and Xin Gao*,
HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic
resistance genes, Microbiome, 2021, 9(1):40. (SCI 一区,Top 期刊,IF=11.6)
[25]. Ming Fan, Hang Chen, Chao You, Li Liu, Yajia Gu, Weijun Peng, Xin Gao and
Lihua Li*. Longitudinal Dynamic Contrast Enhanced Magnetic Resonance Imaging for Predicting Response to Neoadjuvant Chemotherapy in Breast
Cancer, Frontiers in Molecular Bioscience, 2021, 8:622219.(SCI三区,IF=5.2)
[26]. Lin Zhang, Ming Fan, Francesco Napolitano, Xin Gao, Ying Xu, and Lihua
Li*,Transcriptomic analysis identifies organ-specific metastasis genes and
pathways across different primary sites. Journal of Translational Medicine,
2021, 19:31. (SCI 三区,IF=6.1)
[27]. Ming Fan, Pingping Xia,Robert Clarke, Yue Wang, Lihua Li*. Radiogenomic
signatures reveal multiscale intratumor heterogeneity associated with biological
functions and survival in breast cancer. Nature Communications, 2020, 11:4861.
(SCI 一区,Top 期刊,IF=12.12)
[28]. Ming Fan, Wei Yuan, Wenrui Zhao, Maosheng Xu, Shiwei Wang, Xin Gao,
and Lihua Li*. Joint Prediction of Breast Cancer Histological Grade and Ki-67
Expression Level Based on DCE-MRI and DWI Radiomics. IEEE Journal of
Biomedical and Health Informatics. 2020, 24(6), 1632-1642. (SCI 一区,TOP
期刊,IF=5.7)
[29]. Ming Fan*, Huizhong Zheng, Shuo Zheng, Chao You, Yajia Gu, Xin Gao,
Weijun Peng, Lihua Li, Mass detection and segmentation in digital breast
tomosynthesis using 3D-Mask region-based convolutional neural network: A
comparative analysis. Frontiers in Molecular Biosciences, 2020, 7:599333.
(SCI 三区)
[30]. Ming Fan, Zuhui Liu, Maosheng Xu, Shiwei Wang, Tieyong Zeng, Xin Gao,
Lihua Li*, Generative adversarial networks-based super-resolution of diffusion
weighted imaging: application to tumour radiomics in breast cancer. NMR in
Biomedicine, 2020, 33:e4345. (SCI 一区,Top 期刊)
[31]. Longxi Zhou, Zhongxiao Li, Juexiao Zhou, Haoyang Li, Yupeng Chen, Yuxin
Huang, Dexuan Xie, Lintao Zhao, Ming Fan, Shahrukh Hashmi, Faisal
AbdelKareem, Riham Eiada, Xigang Xiao, Lihua Li, Zhaowen Qiu, Xin Gao, A
Rapid, Accurate and Machine-Agnostic Segmentation and Quantification
Method for CT-Based COVID-19 Diagnosis. IEEE Transactions on Medical
Imaging, 2020, 39 (8): 2638 - 2652. (SCI 一区,Top 期刊)
[32]. Ming Fan, Pingping Xia, Bing Liu, Lin Zhang, Yue Wang, Xin Gao, Lihua Li*:
Tumour heterogeneity revealed by unsupervised decomposition of dynamic
contrast-enhanced magnetic resonance imaging is associated with underlying gene expression patterns and poor survival in breast cancer patients. Breast
Cancer Research, 2019, 21(1):112. (SCI 二区)
[33]. Ming Fan, Peng Zhang, Yue Wang, Weijun Peng, Shiwei Wang, Xin Gao,
Maosheng Xu*, Lihua Li*. Radiomic analysis of imaging heterogeneity in
tumours and the surrounding parenchyma based on unsupervised decomposition
of DCE-MRI for predicting molecular subtypes of breast cancer. European
Radiology. 2019, 29(8):4456-4467. (SCI 二区)
[34]. Ming Fan, Zuhui Liu, Sudan Xie, Maosheng Xu, Shiwei Wang, Xin Gao and
Lihua Li*, Integration of dynamic contrast-enhanced magnetic resonance
imaging and T2-weighted imaging radiomic features by a canonical correlation
analysis-based feature fusion method to predict histological grade in ductal
breast carcinoma, Physics in Medicine and Biology. 2019, 64(21), 215001. (SCI
三区)
[35]. Ming Fan, Yuanzhe Li, Shuo Zheng, Weijun Peng, Wei Tang, Lihua Li*,
Computer-aided detection of mass in digital breast tomosynthesis using a faster
region-based convolutional neural network. Methods. 2019, 166:103-111. (SCI
二区)
[36]. Yane Li, Ming Fan, Shichen Liu, Bin Zheng, Lihua Li, Prediction of Short
Term Breast Cancer Risk Based on Deep Convolutional Neural Networks in
Mammography, Journal of Medical Imaging and Health Informatics 9: 1663–
1672, 2019. (SCI)
[37]. Yane Li, Ming Fan, Hu Cheng, Peng Zhang, Bin Zheng, Lihua Li, Assessment
of global and local region-based bilateral mammographic feature asymmetry to
predict short-term breast cancer risk. Physics in Medicine & Biology, 63,
025004, 2018. (SCI 三区)
[38]. Ming Fan, Hu Cheng, Peng Zhang, Xin Gao, Juan Zhang, Guoliang Shao, and
Lihua Li, DCE-MRI Texture Analysis with Tumor Subregion Partitioning for
Predicting Ki-67 Status of Estrogen Receptor-Positive Breast Cancers. Journal
of Magnetic Resonance Imaging, 2018;48(1):237-247 (SCI 二区)
[39]. Ming Fan, Ting He, Peng Zhang, Hu Cheng, Juan Zhang, Xin Gao, Lihua Li*,
Diffusion-Weighted Imaging Features of Breast Tumours and the Surrounding
Stroma Reflect Intrinsic Heterogeneous Characteristics of Molecular Subtypes
in Breast Cancer, NMR in Biomedicine, 2018, 31(2), e3869. (SCI 一区,TOP
期刊)